Package: funspace 0.2.2

funspace: Creating and Representing Functional Trait Spaces

Estimation of functional spaces based on traits of organisms. The package includes functions to impute missing trait values (with or without considering phylogenetic information), and to create, represent and analyse two dimensional functional spaces based on principal components analysis, other ordination methods, or raw traits. It also allows for mapping a third variable onto the functional space. See 'Carmona et al. (2021)' <doi:10.1038/s41586-021-03871-y>, 'Puglielli et al. (2021)' <doi:10.1111/nph.16952>, 'Carmona et al. (2021)' <doi:10.1126/sciadv.abf2675>, 'Carmona et al. (2019)' <doi:10.1002/ecy.2876> for more information.

Authors:Carlos P. Carmona [cre], Nicola Pavanetto [aut], Giacomo Puglielli [aut]

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NEWS

# Install 'funspace' in R:
install.packages('funspace', repos = c('https://carlosp-carmona.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • GSPFF - Aboveground traits from the global spectrum of plant form and function
  • GSPFF_missing - Aboveground traits from the global spectrum of plant form and function
  • GSPFF_missing_tax - Taxonomic information for plants from the global spectrum of plant form and function
  • GSPFF_tax - Taxonomic information for plants from the global spectrum of plant form and function
  • phylo - Phylogeny for species from the global spectrum of plant form and function

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.60 score 2 stars 9 scripts 354 downloads 5 exports 75 dependencies

Last updated 5 months agofrom:db3257f75f. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 15 2024
R-4.5-winOKNov 15 2024
R-4.5-linuxOKNov 15 2024
R-4.4-winOKNov 15 2024
R-4.4-macOKNov 15 2024
R-4.3-winOKNov 15 2024
R-4.3-macOKNov 15 2024

Exports:funspacefunspaceDimfunspaceGAMfunspaceNullimpute

Dependencies:ade4apecliclusterclusterGenerationcodacodetoolscolorspacecombinatcpp11DEoptimdigestdoParalleldoRNGexpmfansifarverfastmatchFNNforeachgenericsggplot2gluegridExtragtableigraphisobanditeratorsitertoolskernlabKernSmoothkslabelinglatticelifecyclemagrittrmapsMASSMatrixmclustmgcvmissForestmnormtmulticoolmunsellmvtnormnlmenumDerivoptimParallelparanpermutephangornphytoolspillarpixmappkgconfigpracmaquadprogR6randomForestRColorBrewerRcppRcppArmadillorlangrngtoolsscalesscatterplot3dsptibbleutf8vctrsveganviridisviridisLitewithr