Package: funspace 0.2.2

funspace: Creating and Representing Functional Trait Spaces

Estimation of functional spaces based on traits of organisms. The package includes functions to impute missing trait values (with or without considering phylogenetic information), and to create, represent and analyse two dimensional functional spaces based on principal components analysis, other ordination methods, or raw traits. It also allows for mapping a third variable onto the functional space. See 'Carmona et al. (2021)' <doi:10.1038/s41586-021-03871-y>, 'Puglielli et al. (2021)' <doi:10.1111/nph.16952>, 'Carmona et al. (2021)' <doi:10.1126/sciadv.abf2675>, 'Carmona et al. (2019)' <doi:10.1002/ecy.2876> for more information.

Authors:Carlos P. Carmona [cre], Nicola Pavanetto [aut], Giacomo Puglielli [aut]

funspace_0.2.2.tar.gz
funspace_0.2.2.zip(r-4.7-any)funspace_0.2.2.zip(r-4.6-any)funspace_0.2.2.zip(r-4.5-any)
funspace_0.2.2.tgz(r-4.6-any)funspace_0.2.2.tgz(r-4.5-any)
funspace_0.2.2.tar.gz(r-4.7-any)funspace_0.2.2.tar.gz(r-4.6-any)
funspace_0.2.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
funspace/json (API)

# Install 'funspace' in R:
install.packages('funspace', repos = c('https://carlosp-carmona.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • GSPFF - Aboveground traits from the global spectrum of plant form and function
  • GSPFF_missing - Aboveground traits from the global spectrum of plant form and function
  • GSPFF_missing_tax - Taxonomic information for plants from the global spectrum of plant form and function
  • GSPFF_tax - Taxonomic information for plants from the global spectrum of plant form and function
  • phylo - Phylogeny for species from the global spectrum of plant form and function

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.75 score 2 stars 28 scripts 431 downloads 5 exports 74 dependencies

Last updated from:db3257f75f. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK180
source / vignettesOK195
linux-releaseOK172
macos-releaseOK163
macos-oldrelOK133
windows-develOK122
windows-releaseOK126
windows-oldrelOK109
wasm-releaseOK110

Exports:funspacefunspaceDimfunspaceGAMfunspaceNullimpute

Dependencies:ade4apecliclusterclusterGenerationcodacodetoolscombinatcpp11DEoptimdigestdoParalleldoRNGexpmfarverfastmatchFNNforeachgenericsggplot2gluegridExtragtableigraphisobanditeratorsitertoolskernlabKernSmoothkslabelinglatticelifecyclemagrittrmapsMASSMatrixmclustmgcvmissForestmnormtmulticoolmvtnormnlmenumDerivoptimParallelparanpermutephangornphytoolspixmappkgconfigpracmaquadprogR6randomForestrangerrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackrlangrngtoolsS7scalesscatterplot3dspvctrsveganviridisviridisLitewithr