Package: funspace 0.2.2

funspace: Creating and Representing Functional Trait Spaces

Estimation of functional spaces based on traits of organisms. The package includes functions to impute missing trait values (with or without considering phylogenetic information), and to create, represent and analyse two dimensional functional spaces based on principal components analysis, other ordination methods, or raw traits. It also allows for mapping a third variable onto the functional space. See 'Carmona et al. (2021)' <doi:10.1038/s41586-021-03871-y>, 'Puglielli et al. (2021)' <doi:10.1111/nph.16952>, 'Carmona et al. (2021)' <doi:10.1126/sciadv.abf2675>, 'Carmona et al. (2019)' <doi:10.1002/ecy.2876> for more information.

Authors:Carlos P. Carmona [cre], Nicola Pavanetto [aut], Giacomo Puglielli [aut]

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NEWS

# Install 'funspace' in R:
install.packages('funspace', repos = c('https://carlosp-carmona.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • GSPFF - Aboveground traits from the global spectrum of plant form and function
  • GSPFF_missing - Aboveground traits from the global spectrum of plant form and function
  • GSPFF_missing_tax - Taxonomic information for plants from the global spectrum of plant form and function
  • GSPFF_tax - Taxonomic information for plants from the global spectrum of plant form and function
  • phylo - Phylogeny for species from the global spectrum of plant form and function

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.68 score 2 stars 12 scripts 213 downloads 5 exports 75 dependencies

Last updated 8 months agofrom:db3257f75f. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 14 2025
R-4.5-winOKJan 14 2025
R-4.5-linuxOKJan 14 2025
R-4.4-winOKJan 14 2025
R-4.4-macOKJan 14 2025
R-4.3-winOKJan 14 2025
R-4.3-macOKJan 14 2025

Exports:funspacefunspaceDimfunspaceGAMfunspaceNullimpute

Dependencies:ade4apecliclusterclusterGenerationcodacodetoolscolorspacecombinatcpp11DEoptimdigestdoParalleldoRNGexpmfansifarverfastmatchFNNforeachgenericsggplot2gluegridExtragtableigraphisobanditeratorsitertoolskernlabKernSmoothkslabelinglatticelifecyclemagrittrmapsMASSMatrixmclustmgcvmissForestmnormtmulticoolmunsellmvtnormnlmenumDerivoptimParallelparanpermutephangornphytoolspillarpixmappkgconfigpracmaquadprogR6randomForestRColorBrewerRcppRcppArmadillorlangrngtoolsscalesscatterplot3dsptibbleutf8vctrsveganviridisviridisLitewithr