{
  "_id": "6a102022acfb0bcc41c8b757",
  "Package": "funspace",
  "Type": "Package",
  "Title": "Creating and Representing Functional Trait Spaces",
  "Version": "0.2.2",
  "Authors@R": "c(\nperson(\"Carlos P.\", \"Carmona\", , \"perezcarmonacarlos@gmail.com\", role = \"cre\",\ncomment = c(ORCID = \"0000-0001-6935-4913\")),\nperson(\"Nicola\", \"Pavanetto\", , \"nicola.pavanetto@emu.ee\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-9441-863X\")),\nperson(\"Giacomo\", \"Puglielli\", , \"giacomo.puglielli@gmail.com\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-0085-4535\"))\n)",
  "Description": "Estimation of functional spaces based on traits of\norganisms. The package includes functions to impute missing\ntrait values (with or without considering phylogenetic\ninformation), and to create, represent and analyse two\ndimensional functional spaces based on principal components\nanalysis, other ordination methods, or raw traits. It also\nallows for mapping a third variable onto the functional space.\nSee 'Carmona et al. (2021)' <doi:10.1038/s41586-021-03871-y>,\n'Puglielli et al.  (2021)' <doi:10.1111/nph.16952>, 'Carmona et\nal. (2021)' <doi:10.1126/sciadv.abf2675>, 'Carmona et al.\n(2019)' <doi:10.1002/ecy.2876> for more information.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.2.3",
  "Config/testthat/edition": "3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-14 06:27:42 UTC",
    "User": "root"
  },
  "Author": "Carlos P. Carmona [cre]\n(<https://orcid.org/0000-0001-6935-4913>), Nicola Pavanetto\n[aut] (<https://orcid.org/0000-0002-9441-863X>), Giacomo\nPuglielli [aut] (<https://orcid.org/0000-0003-0085-4535>)",
  "Maintainer": "Carlos P. Carmona <perezcarmonacarlos@gmail.com>",
  "Config/pak/sysreqs": "libglpk-dev libxml2-dev",
  "Repository": "https://carlosp-carmona.r-universe.dev",
  "Date/Publication": "2024-06-18 02:43:58 UTC",
  "RemoteUrl": "https://github.com/cran/funspace",
  "RemoteRef": "HEAD",
  "RemoteSha": "db3257f75f5f84c7fa700011675df7ca11b5cef1",
  "MD5sum": "f45404401c15ebf49e37fb9147767ae4",
  "_user": "carlosp-carmona",
  "_type": "src",
  "_file": "funspace_0.2.2.tar.gz",
  "_fileid": "c6595e7336bf88f8c13c8f1e72142e1c74373ece19ffbed61a34f080b9714499",
  "_filesize": 1396846,
  "_sha256": "c6595e7336bf88f8c13c8f1e72142e1c74373ece19ffbed61a34f080b9714499",
  "_created": "2026-05-14T06:27:42.000Z",
  "_published": "2026-05-22T09:21:38.287Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77351676130,
      "time": 226,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6988597241"
    },
    {
      "job": 77351676650,
      "time": 183,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6988589146"
    },
    {
      "job": 77351676373,
      "time": 238,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6988594234"
    },
    {
      "job": 77351676322,
      "time": 209,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6988586682"
    },
    {
      "job": 77351676070,
      "time": 196,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6988547047"
    },
    {
      "job": 77351675974,
      "time": 124,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7157138177"
    },
    {
      "job": 77351676220,
      "time": 140,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6988578250"
    },
    {
      "job": 77351676581,
      "time": 121,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6988574252"
    },
    {
      "job": 77351676494,
      "time": 127,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6988575464"
    }
  ],
  "_buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/25845425949",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/funspace",
  "_commit": {
    "id": "db3257f75f5f84c7fa700011675df7ca11b5cef1",
    "author": "Carlos P. Carmona <perezcarmonacarlos@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.2.2\n",
    "time": 1718678638
  },
  "_maintainer": {
    "name": "Carlos P. Carmona",
    "email": "perezcarmonacarlos@gmail.com",
    "login": "carlosp-carmona",
    "uuid": 78408776,
    "orcid": "0000-0001-6935-4913"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "ade4",
      "role": "Imports"
    },
    {
      "package": "ape",
      "role": "Imports"
    },
    {
      "package": "ks",
      "role": "Imports"
    },
    {
      "package": "mgcv",
      "role": "Imports"
    },
    {
      "package": "missForest",
      "role": "Imports"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "paran",
      "role": "Imports"
    },
    {
      "package": "vegan",
      "role": "Imports"
    },
    {
      "package": "phytools",
      "role": "Imports"
    },
    {
      "package": "viridis",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 2,
  "_contributors": [
    {
      "user": "carlosp-carmona",
      "count": 4,
      "uuid": 78408776
    }
  ],
  "_userbio": {
    "uuid": 78408776,
    "type": "user",
    "name": "CarlosP-Carmona"
  },
  "_downloads": {
    "count": 422,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/funspace"
  },
  "_searchresults": 22,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/funspace.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_realowner": "carlosp-carmona",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2023-03-08"
    },
    {
      "version": "0.1.1",
      "date": "2023-03-14"
    },
    {
      "version": "0.2.1",
      "date": "2024-02-13"
    },
    {
      "version": "0.2.2",
      "date": "2024-06-17"
    }
  ],
  "_exports": [
    "funspace",
    "funspaceDim",
    "funspaceGAM",
    "funspaceNull",
    "impute"
  ],
  "_datasets": [
    {
      "name": "GSPFF",
      "title": "Aboveground traits from the global spectrum of plant form and function (complete data)",
      "object": "GSPFF",
      "class": [
        "data.frame"
      ],
      "fields": [
        "la",
        "ln",
        "ph",
        "sla",
        "ssd",
        "sm"
      ],
      "rows": 2630,
      "table": true,
      "tojson": true
    },
    {
      "name": "GSPFF_missing",
      "title": "Aboveground traits from the global spectrum of plant form and function (incomplete data)",
      "object": "GSPFF_missing",
      "class": [
        "data.frame"
      ],
      "fields": [
        "la",
        "ln",
        "ph",
        "sla",
        "ssd",
        "sm"
      ],
      "rows": 10746,
      "table": true,
      "tojson": true
    },
    {
      "name": "GSPFF_missing_tax",
      "title": "Taxonomic information for plants from the global spectrum of plant form and function (incomplete data)",
      "object": "GSPFF_missing_tax",
      "class": [
        "data.frame"
      ],
      "fields": [
        "genus",
        "family",
        "order"
      ],
      "rows": 10746,
      "table": true,
      "tojson": true
    },
    {
      "name": "GSPFF_tax",
      "title": "Taxonomic information for plants from the global spectrum of plant form and function (complete data)",
      "object": "GSPFF_tax",
      "class": [
        "data.frame"
      ],
      "fields": [
        "genus",
        "family",
        "order"
      ],
      "rows": 2630,
      "table": true,
      "tojson": true
    },
    {
      "name": "phylo",
      "title": "Phylogeny for species from the global spectrum of plant form and function (incomplete data)",
      "object": "phylo",
      "class": [
        "phylo"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "funspace",
      "title": "Functional space",
      "topics": [
        "funspace"
      ]
    },
    {
      "page": "funspaceDim",
      "title": "Dimensionality of a trait space",
      "topics": [
        "funspaceDim"
      ]
    },
    {
      "page": "funspaceGAM",
      "title": "Functional space GAM",
      "topics": [
        "funspaceGAM"
      ]
    },
    {
      "page": "funspaceNull",
      "title": "Null models in functional space",
      "topics": [
        "funspaceNull"
      ]
    },
    {
      "page": "GSPFF",
      "title": "Aboveground traits from the global spectrum of plant form and function (complete data)",
      "topics": [
        "GSPFF"
      ]
    },
    {
      "page": "GSPFF_missing",
      "title": "Aboveground traits from the global spectrum of plant form and function (incomplete data)",
      "topics": [
        "GSPFF_missing"
      ]
    },
    {
      "page": "GSPFF_missing_tax",
      "title": "Taxonomic information for plants from the global spectrum of plant form and function (incomplete data)",
      "topics": [
        "GSPFF_missing_tax"
      ]
    },
    {
      "page": "GSPFF_tax",
      "title": "Taxonomic information for plants from the global spectrum of plant form and function (complete data)",
      "topics": [
        "GSPFF_tax"
      ]
    },
    {
      "page": "impute",
      "title": "Imputing Trait Information",
      "topics": [
        "impute"
      ]
    },
    {
      "page": "phylo",
      "title": "Phylogeny for species from the global spectrum of plant form and function (incomplete data)",
      "topics": [
        "phylo"
      ]
    },
    {
      "page": "plot.funspace",
      "title": "Functional space plotting",
      "topics": [
        "plot.funspace"
      ]
    },
    {
      "page": "summary.funspace",
      "title": "Summarizing Functional Spaces",
      "topics": [
        "summary.funspace"
      ]
    }
  ],
  "_rundeps": [
    "ade4",
    "ape",
    "cli",
    "cluster",
    "clusterGeneration",
    "coda",
    "codetools",
    "combinat",
    "cpp11",
    "DEoptim",
    "digest",
    "doParallel",
    "doRNG",
    "expm",
    "farver",
    "fastmatch",
    "FNN",
    "foreach",
    "generics",
    "ggplot2",
    "glue",
    "gridExtra",
    "gtable",
    "igraph",
    "isoband",
    "iterators",
    "itertools",
    "kernlab",
    "KernSmooth",
    "ks",
    "labeling",
    "lattice",
    "lifecycle",
    "magrittr",
    "maps",
    "MASS",
    "Matrix",
    "mclust",
    "mgcv",
    "missForest",
    "mnormt",
    "multicool",
    "mvtnorm",
    "nlme",
    "numDeriv",
    "optimParallel",
    "paran",
    "permute",
    "phangorn",
    "phytools",
    "pixmap",
    "pkgconfig",
    "pracma",
    "quadprog",
    "R6",
    "randomForest",
    "ranger",
    "rbibutils",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "Rdpack",
    "rlang",
    "rngtools",
    "S7",
    "scales",
    "scatterplot3d",
    "sp",
    "vctrs",
    "vegan",
    "viridis",
    "viridisLite",
    "withr"
  ],
  "_score": 1.6434526764861874,
  "_indexed": true,
  "_nocasepkg": "funspace",
  "_universes": [
    "carlosp-carmona"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.2.2",
      "date": "2026-05-14T06:30:53.000Z",
      "distro": "noble",
      "commit": "db3257f75f5f84c7fa700011675df7ca11b5cef1",
      "fileid": "6de379ad39f17011d8beb898a1cf7d9ce36190ff26aceaebe406af1ec2865ec3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/25845425949"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.2.2",
      "date": "2026-05-14T06:30:15.000Z",
      "distro": "noble",
      "commit": "db3257f75f5f84c7fa700011675df7ca11b5cef1",
      "fileid": "d2723d891ef8dbc6f16a7a8a28a63d693a1ffa03fb38ee37c9e625f15a558e10",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/25845425949"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.2.2",
      "date": "2026-05-14T06:30:38.000Z",
      "commit": "db3257f75f5f84c7fa700011675df7ca11b5cef1",
      "fileid": "ee94991928b1bd978e3dbe66b7a171754b0227e6006e000929996e0819984e13",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/25845425949"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.2.2",
      "date": "2026-05-14T06:30:04.000Z",
      "commit": "db3257f75f5f84c7fa700011675df7ca11b5cef1",
      "fileid": "0f9537c5b2d28d20ee6aed630470e90888f8198d207e6113aa8d0b5b85f54dc0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/25845425949"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.2.2",
      "date": "2026-05-14T06:29:17.000Z",
      "commit": "db3257f75f5f84c7fa700011675df7ca11b5cef1",
      "fileid": "5a11e4c63087dd934d4b6220ad113e4b7d0fc9a3fc47c8b4363a1bb6296777aa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/25845425949"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.2.2",
      "date": "2026-05-14T06:29:03.000Z",
      "commit": "db3257f75f5f84c7fa700011675df7ca11b5cef1",
      "fileid": "a6cc84695b9956d0fbde23ddde636b1f3cda61c875112178a0104f0e9ce06ea1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/25845425949"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.2.2",
      "date": "2026-05-14T06:29:10.000Z",
      "commit": "db3257f75f5f84c7fa700011675df7ca11b5cef1",
      "fileid": "0cc8ce2196084e857860199d2f50347bf01cc6068c49482fd4a8c90d2ef1fb6a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/25845425949"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.2.2",
      "date": "2026-05-22T09:21:16.000Z",
      "commit": "db3257f75f5f84c7fa700011675df7ca11b5cef1",
      "fileid": "4d2c5a03e1a0d2f0f895099ebafb2cb270253459d6c4848bb2cdcd4f9aff7da5",
      "status": "success",
      "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/25845425949"
    }
  ]
}