{ "_id": "6ac8d869de46216d5edd853b", "Package": "DarkDiv", "Type": "Package", "Title": "Estimating Dark Diversity and Site-Specific Species Pools", "Version": "0.3.0", "Author": "Carlos P. Carmona and Meelis Partel", "Maintainer": "Carlos P. Carmona ", "Description": "Estimation of dark diversity and site-specific species\npools using species co-occurrences. It includes implementations\nof probabilistic dark diversity based on the Hypergeometric\ndistribution, as well as estimations based on the Beals index,\nwhich can be transformed to binary predictions using different\nthresholds, or transformed into a favorability index. All\nmethods include the possibility of using a calibration dataset\nthat is used to estimate the indication matrix between pairs of\nspecies, or to estimate dark diversity directly on a single\ndataset. See De Caceres and Legendre (2008)\n, Lewis et al. (2016)\n, Partel et al. (2011)\n, Real et al. (2017)\n for further information.", "License": "GPL-3", "Encoding": "UTF-8", "RoxygenNote": "6.1.1", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-09 12:00:51 UTC", "User": "root" }, "Repository": "https://carlosp-carmona.r-universe.dev", "Date/Publication": "2020-07-15 08:00:02 UTC", "RemoteUrl": "https://github.com/cran/DarkDiv", "RemoteRef": "HEAD", "RemoteSha": "acb43486392499deab66c1d2edeb0a69fecd4975", "_user": "carlosp-carmona", "_type": "src", "_file": "DarkDiv_0.3.0.tar.gz", "_fileid": "https://r2.ropensci.org/daeadf183eeb69b158b0595871e3a674fbab7786ff265e6ead37d13bf900aeac", "_filesize": 98945, "_sha256": "daeadf183eeb69b158b0595871e3a674fbab7786ff265e6ead37d13bf900aeac", "_expires": "2027-01-17T12:04:55.000Z", "_created": "2026-10-09T12:00:51.000Z", "_published": "2026-10-09T12:04:56.961Z", "_buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/37926932044", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 113809296901, "time": 110, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11615015291" }, { "job": 113809297156, "time": 104, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11614836209" }, { "job": 113809296941, "time": 174, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11614154482" }, { "job": 113809296929, "time": 147, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11615015385" }, { "job": 113808103705, "time": 205, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11614278093" }, { "job": 113809296912, "time": 81, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11614318324" }, { "job": 113809296844, "time": 68, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11615100162" }, { "job": 113809296982, "time": 78, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11615040227" }, { "job": 113809296848, "time": 95, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11613859956" } ], "_upstream": "https://github.com/cran/DarkDiv", "_commit": { "id": "acb43486392499deab66c1d2edeb0a69fecd4975", "author": "Carlos P. Carmona ", "committer": "cran-robot ", "message": "version 0.3.0\n", "time": 1594800002 }, "_maintainer": { "name": "Carlos P. Carmona", "email": "perezcarmonacarlos@gmail.com", "login": "carlosp-carmona", "description": "", "uuid": 78408776 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "vegan", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "carlosp-carmona", "count": 3, "uuid": 78408776 } ], "_userbio": { "uuid": 78408776, "type": "user", "name": "CarlosP-Carmona", "followers": 3 }, "_downloads": { "count": 391, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/DarkDiv" }, "_mentions": 1, "_searchresults": 12, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/DarkDiv.html", "extra/manual.pdf" ], "_realowner": "carlosp-carmona", "_cranurl": false, "_releases": [ { "version": "0.1.0", "date": "2019-04-27" }, { "version": "0.2.0", "date": "2020-02-12" }, { "version": "0.3.0", "date": "2020-07-15" } ], "_exports": [ "DarkDiv" ], "_help": [ { "page": "DarkDiv", "title": "Dark Diversity", "topics": [ "DarkDiv" ] } ], "_rundeps": [ "cluster", "lattice", "MASS", "Matrix", "mgcv", "nlme", "permute", "vegan" ], "_score": 1.0791812460476249, "_indexed": true, "_nocasepkg": "darkdiv", "_universes": [ "carlosp-carmona" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.3.0", "date": "2026-10-09T12:02:37.000Z", "distro": "resolute", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "https://r2.ropensci.org/2abce11ccd347e9279ee19e48524e88f3720c464aca2f7a2dc7edf3e9700a80a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/37926932044" }, { "r": "4.6.1", "os": "linux", "version": "0.3.0", "date": "2026-10-09T12:02:29.000Z", "distro": "resolute", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "https://r2.ropensci.org/53cdad0d5e2bb136e813b0018e6bbc0cf6d11ef20f0a38bedc1d0e646c960d04", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/37926932044" }, { "r": "4.5.3", "os": "mac", "version": "0.3.0", "date": "2026-10-09T12:03:40.000Z", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "https://r2.ropensci.org/07947108080e0f965215feef8c806959a1acad06cacbb17bfc8a4ed9551f00b6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/37926932044" }, { "r": "4.6.1", "os": "mac", "version": "0.3.0", "date": "2026-10-09T12:03:17.000Z", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "https://r2.ropensci.org/832d879a925108a59683919f70ce5e049240dc6bbffc44ab90f5c234a2c34482", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/37926932044" }, { "r": "4.6.0", "os": "wasm", "version": "0.3.0", "date": "2026-10-09T12:02:30.000Z", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "https://r2.ropensci.org/d6311e403bdd62373f5d5ab27d8f7f24d6ef758e9f55d9ce7514abf0dec81e73", "status": "success", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/37926932044" }, { "r": "4.7.0", "os": "win", "version": "0.3.0", "date": "2026-10-09T12:01:46.000Z", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "https://r2.ropensci.org/fc00682148a5a8737ab64e0c37d91880e093cce9454a9f5032f614f95aed0641", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/37926932044" }, { "r": "4.5.3", "os": "win", "version": "0.3.0", "date": "2026-10-09T12:01:54.000Z", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "https://r2.ropensci.org/cfce33e3fed50600c488cd5cc932a26333bc1f00f8d9ca9c04476ea2b6d95d0d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/37926932044" }, { "r": "4.6.1", "os": "win", "version": "0.3.0", "date": "2026-10-09T12:02:18.000Z", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "https://r2.ropensci.org/0ba0b3e82765ae0261acdf17c87684cb57872bd90d2f094c03612c97e03a793b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/37926932044" } ] }