{ "_id": "6a17f192acfb0bcc41da741c", "Package": "DarkDiv", "Type": "Package", "Title": "Estimating Dark Diversity and Site-Specific Species Pools", "Version": "0.3.0", "Author": "Carlos P. Carmona and Meelis Partel", "Maintainer": "Carlos P. Carmona ", "Description": "Estimation of dark diversity and site-specific species\npools using species co-occurrences. It includes implementations\nof probabilistic dark diversity based on the Hypergeometric\ndistribution, as well as estimations based on the Beals index,\nwhich can be transformed to binary predictions using different\nthresholds, or transformed into a favorability index. All\nmethods include the possibility of using a calibration dataset\nthat is used to estimate the indication matrix between pairs of\nspecies, or to estimate dark diversity directly on a single\ndataset. See De Caceres and Legendre (2008)\n, Lewis et al. (2016)\n, Partel et al. (2011)\n, Real et al. (2017)\n for further information.", "License": "GPL-3", "Encoding": "UTF-8", "RoxygenNote": "6.1.1", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-28 07:38:21 UTC", "User": "root" }, "Repository": "https://carlosp-carmona.r-universe.dev", "Date/Publication": "2020-07-15 08:00:02 UTC", "RemoteUrl": "https://github.com/cran/DarkDiv", "RemoteRef": "HEAD", "RemoteSha": "acb43486392499deab66c1d2edeb0a69fecd4975", "MD5sum": "524cf9bdd2eca855ab754f0be9910e98", "_user": "carlosp-carmona", "_type": "src", "_file": "DarkDiv_0.3.0.tar.gz", "_fileid": "5dd1c8f14e0e86514896d1b25e3a6b6ed99c015a177543dca6fe1473b7878054", "_filesize": 98435, "_sha256": "5dd1c8f14e0e86514896d1b25e3a6b6ed99c015a177543dca6fe1473b7878054", "_created": "2026-05-28T07:38:21.000Z", "_published": "2026-05-28T07:41:06.589Z", "_distro": "noble", "_jobs": [ { "job": 78245312871, "time": 132, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7260308309" }, { "job": 78245312856, "time": 127, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7260306424" }, { "job": 78245312900, "time": 109, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7260301084" }, { "job": 78245312855, "time": 99, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7260297556" }, { "job": 78245016347, "time": 123, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7260264718" }, { "job": 78245312843, "time": 87, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7260294102" }, { "job": 78245312896, "time": 80, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7260291647" }, { "job": 78245312885, "time": 75, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7260290126" }, { "job": 78245312864, "time": 79, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7260291297" } ], "_buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/26561373554", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/DarkDiv", "_commit": { "id": "acb43486392499deab66c1d2edeb0a69fecd4975", "author": "Carlos P. Carmona ", "committer": "cran-robot ", "message": "version 0.3.0\n", "time": 1594800002 }, "_maintainer": { "name": "Carlos P. Carmona", "email": "perezcarmonacarlos@gmail.com", "login": "carlosp-carmona", "description": "", "uuid": 78408776 }, "_registered": true, "_dependencies": [ { "package": "vegan", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "carlosp-carmona", "count": 3, "uuid": 78408776 } ], "_userbio": { "uuid": 78408776, "type": "user", "name": "CarlosP-Carmona" }, "_downloads": { "count": 219, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/DarkDiv" }, "_mentions": 1, "_searchresults": 9, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/DarkDiv.html", "manual.pdf" ], "_realowner": "carlosp-carmona", "_cranurl": false, "_releases": [ { "version": "0.1.0", "date": "2019-04-27" }, { "version": "0.2.0", "date": "2020-02-12" }, { "version": "0.3.0", "date": "2020-07-15" } ], "_exports": [ "DarkDiv" ], "_help": [ { "page": "DarkDiv", "title": "Dark Diversity", "topics": [ "DarkDiv" ] } ], "_rundeps": [ "cluster", "lattice", "MASS", "Matrix", "mgcv", "nlme", "permute", "vegan" ], "_score": 1, "_indexed": true, "_nocasepkg": "darkdiv", "_universes": [ "carlosp-carmona" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.3.0", "date": "2026-05-28T07:40:20.000Z", "distro": "noble", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "30fbbfe5eb423c663e723281ca07ef791f7aca19eb0935209dc10eacf878c2f3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/26561373554" }, { "r": "4.6.0", "os": "linux", "version": "0.3.0", "date": "2026-05-28T07:40:23.000Z", "distro": "noble", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "d8b07c591fa769ffe30c05c47cfe1966f237f04e42dd593134b7923005b575c5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/26561373554" }, { "r": "4.5.3", "os": "mac", "version": "0.3.0", "date": "2026-05-28T07:40:07.000Z", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "5203eecda3e27914461574de9053fdfb0d367406173c22b061dc21efa71c4597", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/26561373554" }, { "r": "4.6.0", "os": "mac", "version": "0.3.0", "date": "2026-05-28T07:39:57.000Z", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "f3acf1c6f4e030847b3052683f2a2983581ce834ccb66e51b8c6236b8756e4d4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/26561373554" }, { "r": "4.6.0", "os": "wasm", "version": "0.3.0", "date": "2026-05-28T07:40:06.000Z", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "d806ce3f94b610621d457f562ff4d93dc36d4a2b6c54d3a793697d8b7229265f", "status": "success", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/26561373554" }, { "r": "4.7.0", "os": "win", "version": "0.3.0", "date": "2026-05-28T07:39:33.000Z", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "725fa74056ae68f375e4f1eb51af58f73f318e61c8a8a452c64221bd15459b1e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/26561373554" }, { "r": "4.5.3", "os": "win", "version": "0.3.0", "date": "2026-05-28T07:39:28.000Z", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "a7627a557eedb0af1fd1f6f3aa5c6c4f471990496ac1a6c0555d52224f40d64f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/26561373554" }, { "r": "4.6.0", "os": "win", "version": "0.3.0", "date": "2026-05-28T07:39:30.000Z", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "c07fbcc481bb5f8c4bf79f80f553cf4852841454f64a2466652d5343be3cca47", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/26561373554" } ] }