{ "_id": "6a483254e06c18f0a6530426", "Package": "DarkDiv", "Type": "Package", "Title": "Estimating Dark Diversity and Site-Specific Species Pools", "Version": "0.3.0", "Author": "Carlos P. Carmona and Meelis Partel", "Maintainer": "Carlos P. Carmona ", "Description": "Estimation of dark diversity and site-specific species\npools using species co-occurrences. It includes implementations\nof probabilistic dark diversity based on the Hypergeometric\ndistribution, as well as estimations based on the Beals index,\nwhich can be transformed to binary predictions using different\nthresholds, or transformed into a favorability index. All\nmethods include the possibility of using a calibration dataset\nthat is used to estimate the indication matrix between pairs of\nspecies, or to estimate dark diversity directly on a single\ndataset. See De Caceres and Legendre (2008)\n, Lewis et al. (2016)\n, Partel et al. (2011)\n, Real et al. (2017)\n for further information.", "License": "GPL-3", "Encoding": "UTF-8", "RoxygenNote": "6.1.1", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-03 22:03:25 UTC", "User": "root" }, "Repository": "https://carlosp-carmona.r-universe.dev", "Date/Publication": "2020-07-15 08:00:02 UTC", "RemoteUrl": "https://github.com/cran/DarkDiv", "RemoteRef": "HEAD", "RemoteSha": "acb43486392499deab66c1d2edeb0a69fecd4975", "_user": "carlosp-carmona", "_type": "src", "_file": "DarkDiv_0.3.0.tar.gz", "_fileid": "https://r2.ropensci.org/3e134d8d41e23faef605c2a286ef692059d78b6618c997e092f120b7b0d583f8", "_filesize": 99906, "_sha256": "3e134d8d41e23faef605c2a286ef692059d78b6618c997e092f120b7b0d583f8", "_expires": "2026-10-11T22:06:10.000Z", "_created": "2026-07-03T22:03:25.000Z", "_published": "2026-07-03T22:06:12.203Z", "_jobs": [ { "job": 85076657192, "time": 120, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8075380719" }, { "job": 85076657165, "time": 128, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8075381820" }, { "job": 85076657133, "time": 80, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8075373394" }, { "job": 85076657152, "time": 99, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8075377028" }, { "job": 85076352211, "time": 196, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8075359403" }, { "job": 85076657161, "time": 97, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8075376735" }, { "job": 85076657155, "time": 87, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8075374566" }, { "job": 85076657135, "time": 82, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8075373921" }, { "job": 85076657150, "time": 75, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8075372563" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/28685136129", "_status": "success", "_upstream": "https://github.com/cran/DarkDiv", "_commit": { "id": "acb43486392499deab66c1d2edeb0a69fecd4975", "author": "Carlos P. Carmona ", "committer": "cran-robot ", "message": "version 0.3.0\n", "time": 1594800002 }, "_maintainer": { "name": "Carlos P. Carmona", "email": "perezcarmonacarlos@gmail.com", "login": "carlosp-carmona", "description": "", "uuid": 78408776 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "vegan", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "carlosp-carmona", "count": 3, "uuid": 78408776 } ], "_userbio": { "uuid": 78408776, "type": "user", "name": "CarlosP-Carmona", "followers": 3 }, "_downloads": { "count": 291, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/DarkDiv" }, "_mentions": 1, "_searchresults": 9, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/DarkDiv.html", "manual.pdf" ], "_realowner": "carlosp-carmona", "_cranurl": false, "_releases": [ { "version": "0.1.0", "date": "2019-04-27" }, { "version": "0.2.0", "date": "2020-02-12" }, { "version": "0.3.0", "date": "2020-07-15" } ], "_exports": [ "DarkDiv" ], "_help": [ { "page": "DarkDiv", "title": "Dark Diversity", "topics": [ "DarkDiv" ] } ], "_rundeps": [ "cluster", "lattice", "MASS", "Matrix", "mgcv", "nlme", "permute", "vegan" ], "_score": 1, "_indexed": true, "_nocasepkg": "darkdiv", "_universes": [ "carlosp-carmona" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.3.0", "date": "2026-07-03T22:05:22.000Z", "distro": "resolute", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "https://r2.ropensci.org/eb475c216a00d45e4cd775754f213f01dd1c19c3332aad7413dba58806062ccc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/28685136129" }, { "r": "4.6.1", "os": "linux", "version": "0.3.0", "date": "2026-07-03T22:05:25.000Z", "distro": "resolute", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "https://r2.ropensci.org/29659b85229c79740062a52424ab35a20db0bb6c1d6ac73a77a759ae0e0b96c0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/28685136129" }, { "r": "4.5.3", "os": "mac", "version": "0.3.0", "date": "2026-07-03T22:04:49.000Z", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "https://r2.ropensci.org/1cdc100d04a30ab93176217553623e89e06a2260feea5755ab7e0ab87d07558a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/28685136129" }, { "r": "4.6.1", "os": "mac", "version": "0.3.0", "date": "2026-07-03T22:05:06.000Z", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "https://r2.ropensci.org/14d58012f94db986d62fd9224c47ebeaf3aa7a3b0eb800a807e7df9d38b9039f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/28685136129" }, { "r": "4.6.0", "os": "wasm", "version": "0.3.0", "date": "2026-07-03T22:05:21.000Z", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "https://r2.ropensci.org/549f750dd9ebec81048ee2cb94bd8b6fd34563d77766fba46ebfca8c0a2551a5", "status": "success", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/28685136129" }, { "r": "4.7.0", "os": "win", "version": "0.3.0", "date": "2026-07-03T22:04:40.000Z", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "https://r2.ropensci.org/69561b02ebcccc1ba89e2e0b9f86e447549e32c9db24fb5a9fedcb92277f1d52", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/28685136129" }, { "r": "4.5.3", "os": "win", "version": "0.3.0", "date": "2026-07-03T22:04:38.000Z", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "https://r2.ropensci.org/c01d49b65333462f1a5188f6b547b481e5f3ae4be9f85073cf02e66ffe748e83", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/28685136129" }, { "r": "4.6.1", "os": "win", "version": "0.3.0", "date": "2026-07-03T22:04:33.000Z", "commit": "acb43486392499deab66c1d2edeb0a69fecd4975", "fileid": "https://r2.ropensci.org/deda95eda9457d4b4e0c31d54fbcc9de0318d4cc562e097f377b636636d9d162", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/carlosp-carmona/actions/runs/28685136129" } ] }